[INFO] fetching crate genomic_interval_pipeline 0.1.3...
[INFO] building genomic_interval_pipeline-0.1.3 against master#ff34b919075f35a1787659e9c448a34b06bab8de for issue-85264
[INFO] extracting crate genomic_interval_pipeline 0.1.3 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate genomic_interval_pipeline 0.1.3 on toolchain ff34b919075f35a1787659e9c448a34b06bab8de
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff34b919075f35a1787659e9c448a34b06bab8de" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate genomic_interval_pipeline 0.1.3
[INFO] finished tweaking crates.io crate genomic_interval_pipeline 0.1.3
[INFO] tweaked toml for crates.io crate genomic_interval_pipeline 0.1.3 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate crates.io crate genomic_interval_pipeline 0.1.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+ff34b919075f35a1787659e9c448a34b06bab8de" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ff34b919075f35a1787659e9c448a34b06bab8de" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2b6b8ce65be939577828fe62be32bf150b28d24f2b31319d1b68ef37a0448ee6
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2b6b8ce65be939577828fe62be32bf150b28d24f2b31319d1b68ef37a0448ee6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2b6b8ce65be939577828fe62be32bf150b28d24f2b31319d1b68ef37a0448ee6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2b6b8ce65be939577828fe62be32bf150b28d24f2b31319d1b68ef37a0448ee6", kill_on_drop: false }`
[INFO] [stdout] 2b6b8ce65be939577828fe62be32bf150b28d24f2b31319d1b68ef37a0448ee6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+ff34b919075f35a1787659e9c448a34b06bab8de" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 77f255425a427b5d8a15b6d3e072e1edb0234f3775fa3556475bf7a7f27ff8ba
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "77f255425a427b5d8a15b6d3e072e1edb0234f3775fa3556475bf7a7f27ff8ba", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling syn v1.0.50
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling matches v0.1.8
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling scopeguard v1.1.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling percent-encoding v2.1.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-segmentation v1.7.0
[INFO] [stderr]    Compiling smallvec v1.5.0
[INFO] [stderr]    Compiling ascii v1.0.0
[INFO] [stderr]    Compiling rustc-serialize v0.3.24
[INFO] [stderr]    Compiling hdf5 v0.7.0
[INFO] [stderr]    Compiling termcolor v1.1.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling tinyvec v1.1.0
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling cc v1.0.65
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling libloading v0.6.5
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling humantime v1.3.0
[INFO] [stderr]    Compiling unicode-bidi v0.3.4
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling form_urlencoded v1.0.0
[INFO] [stderr]    Compiling lock_api v0.3.4
[INFO] [stderr]    Compiling hdf5-types v0.7.0
[INFO] [stderr]    Compiling parking_lot_core v0.7.2
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling openssl-src v111.12.0+1.1.1h
[INFO] [stderr]    Compiling parking_lot v0.10.2
[INFO] [stderr]    Compiling unicode-normalization v0.1.16
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]    Compiling memrange v0.1.3
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling theban_interval_tree v0.7.1
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.38+curl-7.73.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling regex v1.4.2
[INFO] [stderr]    Compiling flate2 v1.0.19
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling url v2.2.0
[INFO] [stderr]    Compiling pbr v1.0.3
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-2c00444c28d6f7b4/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x564871c3fed0 - std::backtrace_rs::backtrace::libunwind::trace::hdcf4f90f85129e83
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x564871c3fed0 - std::backtrace_rs::backtrace::trace_unsynchronized::h2669e30cb82f6732
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x564871c3fed0 - std::sys_common::backtrace::_print_fmt::hfbda19e17f6db318
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x564871c3fed0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h1a8751bf59281272
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x564871c5ea0f - core::fmt::write::h7aa6cd0067dca82a
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/core/src/fmt/mod.rs:1094:17
[INFO] [stderr]      5:     0x564871c3d365 - std::io::Write::write_fmt::hd7dd3a1df9b6befb
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/io/mod.rs:1584:15
[INFO] [stderr]      6:     0x564871c41f4b - std::sys_common::backtrace::_print::h551e9ec8a9fa8106
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x564871c41f4b - std::sys_common::backtrace::print::ha4b1c5e95fa040b3
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x564871c41f4b - std::panicking::default_hook::{{closure}}::h0b34c9ab7fb9f857
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x564871c41a2d - std::panicking::default_hook::h3067e8318decd17a
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x564871c424fd - std::panicking::rust_panic_with_hook::h81b8facc50f34daa
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:591:17
[INFO] [stderr]     11:     0x564871a61973 - std::panicking::begin_panic::{{closure}}::h1e6cdb5ab29fb1c8
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:520:9
[INFO] [stderr]     12:     0x564871a655d9 - std::sys_common::backtrace::__rust_end_short_backtrace::hd8798532463ca724
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x564871a618a9 - std::panicking::begin_panic::h52ff1b6550e2570e
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:519:12
[INFO] [stderr]     14:     0x564871a35dd9 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h950f4ebaf753c295
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]     15:     0x564871a375ec - build_script_build::main::h66e0e787fc613fc2
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9
[INFO] [stderr]     16:     0x564871a3ad9b - core::ops::function::FnOnce::call_once::h44a73daba8e085a5
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x564871a42ebe - std::sys_common::backtrace::__rust_begin_short_backtrace::hfe8d630a0e634d58
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x564871a40fd1 - std::rt::lang_start::{{closure}}::hf3bacc01c3306ee0
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/rt.rs:49:18
[INFO] [stderr]     19:     0x564871c428fa - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h3b8c329143d7638a
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x564871c428fa - std::panicking::try::do_call::h4b72c261b4eefc1b
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:379:40
[INFO] [stderr]     21:     0x564871c428fa - std::panicking::try::h703d31b7896cbd49
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panicking.rs:343:19
[INFO] [stderr]     22:     0x564871c428fa - std::panic::catch_unwind::h37cad9b35388a915
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/panic.rs:431:14
[INFO] [stderr]     23:     0x564871c428fa - std::rt::lang_start_internal::hab5a8a909af4f90e
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/rt.rs:34:21
[INFO] [stderr]     24:     0x564871a40fb0 - std::rt::lang_start::h31d57954bb9515ff
[INFO] [stderr]                                  at /rustc/ff34b919075f35a1787659e9c448a34b06bab8de/library/std/src/rt.rs:48:5
[INFO] [stderr]     25:     0x564871a38aec - main
[INFO] [stderr]     26:     0x7fa135e320b3 - __libc_start_main
[INFO] [stderr]     27:     0x564871a30e4e - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "77f255425a427b5d8a15b6d3e072e1edb0234f3775fa3556475bf7a7f27ff8ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "77f255425a427b5d8a15b6d3e072e1edb0234f3775fa3556475bf7a7f27ff8ba", kill_on_drop: false }`
[INFO] [stdout] 77f255425a427b5d8a15b6d3e072e1edb0234f3775fa3556475bf7a7f27ff8ba
